Publications#
Peer-Reviewed Publications#
“Modeling the zebrafish gut microbiome’s resistance and sensitivity to climate change and parasite infection” Frontiers in Microbiomes
|
2025 |
“Gut microbiota metabolically mediate intestinal helminth infection in zebrafish” mSystems
|
2024 |
“The zebrafish gut microbiome influences benzo[a]pyrene developmental neurobehavioral toxicity” Scientific Reports
|
2024 |
“Disentangling the link between zebrafish diet, gut microbiome succession, and Mycobacterium chelonae infection” Animal Microbiome
|
2023 |
“Early enteric and hepatic responses to ingestion of polystyrene nanospheres from water in C57BL/6 mice” Frontiers in Water
|
2022 |
“Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning” mSystems
|
2022 |
“Phylogenetic Integration Reveals the Zebrafish Core Microbiome and Its Sensitivity to Environmental Exposures” Toxics
|
2021 |
Preprints#
“Historical contingency shapes zebrafish host-microbiome responses to a subsequent biotic challenge” bioRxiv (Cold Spring Harbor Laboratory)
|
2026 |
“The zebrafish gut microbiome influences benzo[a]pyrene developmental neurotoxicity” Research Square
|
2024 |
“Common laboratory diets differentially influence zebrafish gut microbiome’s successional development and sensitivity to pathogen exposure” Research Square
|
2023 |
In-prep Publications#
“Using fecal samples as a reliable proxy for bumblebee (Bombus terrestris) gut microbiota community analysis” (in-prep; co-first authors)
|
2026* |
“System-Agnostic Dynamical Microbiome Measures (SADMMs) for longitudinal multi-study and -system microbiome analysis” (in-prep)
|
2026* |
“Investigating the interaction of host genetics and parasite burden on the microbiome in zebrafish” (in-prep, draft available upon request)
|
2025* |
“Analyzing batch effect correction algorithms for small molecule data using ground truth from a designed experiment” (in-prep)
|
2025* |
Presentations#
“Defining the context dependence of how the zebrafish gut microbiome responds to environmental stressors.” Invited Seminar, Department of Genetics and Evolution, University of Geneva.
|
2025 Geneva, Switzerland |
“Defining the context dependence of how the zebrafish gut microbiome responds to environmental stressors.” Invited Seminar, Institute of Molecular Biology, University of Oregon.
|
2025 Eugene, OR |
“Modelling the gut microbiome’s resistance and resilience to climate change and infection in zebrafish.” Connecting Microbiome Communities.
|
2024 San Diego, CA |
“Modelling the gut microbiome’s resistance and resilience to climate change and infection in zebrafish.” Beneficial Microbes Conference.
|
2024 Madison, WI |
“Choice of batch correction method is an important factor in small molecule study.” Metabolomics Association of North America.
|
2023 Columbia, MO |
“Effects of diet on growth and the microbiome.” Aquaculture.
|
2022 San Diego, CA |
“Zebrafish laboratory diets differentially alter gut microbiota composition.” 3rd Intl. Fish Microbiota Workshop, Chinese Academy of Agriculture Sciences.
|
2021 Beijing, China (remote) |
Conference Posters#
“Unraveling how gut microbiota influence nurse-to-forager behavioral emergence in honeybees.” XX International Congress of the International Union for the Study of Social Insects (IUSSI). Poster
|
2026 Freiburg, Germany |
“Ecological, Developmental, and Social Determinants of Microbial Transmission in the Semelparous Eusocial Bee Bombus terrestris.” Biology26 Conference, University of Neuchâtel.
|
2026 Neuchâtel, Switzerland |
“Modelling the Gut Microbiome’s Resistance and Resilience to Climate Change and Infection in Zebrafish.” College of Science Graduate Science Research Showcase, Oregon State University.
|
2025 Corvallis, OR |
“The human gut microbiome at the intersection of public health and social equity”. Oregon Public Health Association. Poster
|
2024 Corvallis, OR |
“How do external environmental factors impact the gut microbiome to influence host health?” ARCS Foundation. Poster
|
2022 Portland, OR |
“The Gut Microbiome Drives Benzo[a]pyrene’s Impact on Zebrafish Behavioral Development.” 2nd Intl. Fish Microbiota Workshop, University of Oregon.
|
2019 Eugene, OR |
“The Gut Microbiome Drives Benzo[a]pyrene’s Impact on Zebrafish Behavioral Development.” CAS Student Showcase, Oregon State University.
|
2019 Corvallis, OR |
Conference Panels#
“The Importance of Inclusive Practices in Microbiome Science.” Beneficial Microbes.
|
2024 Madison, WI |
Workshops#
“Microbiome Data Analytics Boot Camp: Planning, generating, and analyzing 16S rRNA gene sequencing surveys” Columbia University (SHARP).
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2025 Virtual (remote) |
“Microbiome Metadata Mastery and Research Training: Equipping the Next Generation of Researchers Across Academia, Government, and Industry” Connecting Microbiome Communities.
|
2024 San Diego, CA |
“NMDC: Metadata Standards and Submission Portal for Multi-Omic Analysis” Microbiology Department, Oregon State University.
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2024 Corvallis, OR |
“ASM professional development series for Oregon microbiologists: Careers in academia vs. industry” American Society for Microbiology.
|
2024 Corvallis, OR |
Other#
Ph.D. Dissertation#
“Defining the context dependence of how the zebrafish (*Danio rerio*) gut microbiome responds to environmental stressors” Oregon State University.
|
2025 |
Undergraduate Thesis#
“The Gut Microbiome Drives Benzo[a]pyrene’s Impact on Zebrafish Behavioral Development.” Oregon State University.
|
2020 |
Peer-reviewed papers and preprints are synced automatically from OpenAlex once a week (ORCID). Last synced: 2026-08-13 14:18 UTC. .. OPENALEX-SYNC:END
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