Publications

Peer-Reviewed Publications

“Modelling the gut microbiome’s resistance and resilience to climate change and infection in zebrafish” Front. Microbiomes PDF Michael J. Sieler Jr., …	2025
“Gut microbiota metabolically mediate intestinal helminth infection in Zebrafish” mSystems PDF Austin J. Hammer, …, Michael J. Sieler Jr., …	2024
“The zebrafish gut microbiome influences benzo-a-pyrene developmental neurobehavioral toxicity.” Nature Sci Rep PDF Keaton Stagaman, Alexandra Alexiev, Michael J. Sieler Jr., …	2024
“Disentangling the link between zebrafish diet, gut microbiome succession, and Mycobacterium chelonae infection.” Anim. Microbiome. PDF Michael J. Sieler Jr., …	2023
“Early Enteric and Hepatic Responses to Ingestion of Polystyrene Nanospheres from Water in C57BL/6 Mice.” Front. Water. PDF Joseph A. Szule, …, Michael J. Sieler Jr., …	2022
“Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning.” Msystems. PDF David, Maude M., …, Michael J. Sieler Jr., …	2022
“Phylogenetic integration reveals the zebrafish core microbiome and its sensitivity to environmental exposures.” Toxics. PDF Sharpton, Thomas J., …, Michael J. Sieler Jr., …	2021

In-prep Publications

“Investigating the interaction of host genetics and parasite burden on the microbiome in zebrafish” (in-prep, draft available upon request) Emilee Lance, Michael J. Sieler Jr., …	2025*
“Analyzing batch effect correction algorithms for small molecule data using ground truth from a designed experiment” (in-prep) Damon T. Leech, Michael J. Sieler Jr., …	2025*

Presentations

“Modelling the gut microbiome’s resistance and resilience to climate change and infection in zebrafish.” Connecting Microbiome Communities. Michael J. Sieler Jr., et al.	2024 San Diego, CA
“Modelling the gut microbiome’s resistance and resilience to climate change and infection in zebrafish.” Beneficial Microbes Conference. Michael J. Sieler Jr., et al.	2024 Madison, WI
“Choice of batch correction method is an important factor in small molecule study.” Metabolomics Association of North America. Michael J. Sieler Jr., et al.	2023 Columbia, MO
“Effects of diet on growth and the microbiome.” Aquaculture. Slides Michael J. Sieler Jr., et al.	2022 San Diego, CA
“Zebrafish laboratory diets differentially alter gut microbiota composition.” 3rd Intl. Fish Microbiota Workshop, Chinese Academy of Agriculture Sciences. Slides Michael J. Sieler Jr., et al.	2021 Beijing, China (remote)

Conference Posters

“The human gut microbiome at the intersection of public health and social equity”. Oregon Public Health Association. Poster Michael J. Sieler Jr.	2024 Corvallis, OR
“How do external environmental factors impact the gut microbiome to influence host health?” ARCS Foundation. Poster Michael J. Sieler Jr., et al.	2022 Portland, OR
“The Gut Microbiome Drives Benzo[a]pyrene’s Impact on Zebrafish Behavioral Development.” 2nd Intl. Fish Microbiota Workshop, University of Oregon. Michael J. Sieler Jr., et al.	2019 Eugene, OR
“The Gut Microbiome Drives Benzo[a]pyrene’s Impact on Zebrafish Behavioral Development.” CAS Student Showcase, Oregon State University. Michael J. Sieler Jr., et al.	2019 Corvallis, OR

Conference Panels

“The Importance of Inclusive Practices in Microbiome Science.” Beneficial Microbes. Mónica Medina, Rosie Alegado, Ibrahim Zuniga-Chaves, Korin Jones, Jessamine Kuehn, Michael J. Sieler Jr.

2024 Madison, WI

Workshops

“Microbiome Data Analytics Boot Camp: Planning, generating, and analyzing 16S rRNA gene sequencing surveys” Columbia University. Michael J. Sieler Jr., et al.	2025 New York, NY (remote)
“Mastering metadata: Utilizing NMDC resources for microbiome research reproducibility.” Connecting Microbiome Communities. Michael J. Sieler Jr., et al.	2024 San Diego, CA
“Metadata Standards and Submission Portal” National Microbiome Data Collaborative. Michael J. Sieler Jr.	2024 Corvallis, OR
“ASM professional development series for Oregon microbiologists: Careers in academia vs. industry” American Society for Microbiology. Michael J. Sieler Jr., et al.	2024 Corvallis, OR

Other

Undergraduate Thesis

“The Gut Microbiome Drives Benzo[a]pyrene’s Impact on Zebrafish Behavioral Development.” Oregon State University. PDF Michael J. Sieler Jr., …

2020

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